Bioinformatics Software Platform

Discover, learn, and use the best bioinformatics tools for your research

Browse Software
View Tutorials

Software Directory

All available bioinformatics software and tools

GROMACS

High-performance molecular dynamics simulation package

Learn more →

AMBER

Biomolecular simulation software suite

Learn more →

NAMD

Parallel molecular dynamics simulation package

Learn more →

LAMMPS

Large-scale atomic/molecular massively parallel simulator

Learn more →

OpenMM

High-performance molecular dynamics library

Learn more →

CHARMM

Chemistry at HARvard Macromolecular Mechanics

Learn more →

Desmond

High-performance molecular dynamics simulator

Learn more →

ACEMD

GPU-accelerated molecular dynamics simulator

Learn more →

TINKER

Molecular modeling and simulation package

Learn more →

GROMOS

Molecular dynamics simulation package

Learn more →

DL_POLY

General-purpose molecular dynamics simulation package

Learn more →

MCPRO

Protein Monte Carlo simulation package

Learn more →

PLUMED

Enhanced sampling and free energy calculation library

Learn more →

CP2K

Quantum chemistry and molecular dynamics simulation package

Learn more →

YASARA

Molecular modeling and simulation package

Learn more →

VMD

Visual Molecular Dynamics visualization program

Learn more →

PyMOL

Molecular visualization system

Learn more →

Chimera

Interactive molecular visualization program

Learn more →

BLAST

Basic Local Alignment Search Tool

Learn more →

Tutorial Directory

Detailed software usage tutorials and guides

Molecular Dynamics Tutorials

GROMACS Tutorial

Complete guide to GROMACS simulation

AMBER Tutorial

Complete guide to AMBER simulation

NAMD Tutorial

Complete guide to NAMD simulation

LAMMPS Tutorial

Complete guide to LAMMPS simulation

OpenMM Tutorial

Complete guide to OpenMM simulation

CHARMM Tutorial

Complete guide to CHARMM simulation

DL_POLY Tutorial

Complete guide to DL_POLY simulation

GROMOS Tutorial

Complete guide to GROMOS simulation

TINKER Tutorial

Complete guide to TINKER simulation

ACEMD Tutorial

Complete guide to ACEMD simulation

Visualization Tutorials

VMD Tutorial

Complete guide to VMD visualization

PyMOL Tutorial

Complete guide to PyMOL visualization

Chimera Tutorial

Complete guide to Chimera visualization

Other Tutorials

CP2K Tutorial

Complete guide to CP2K quantum chemistry

PLUMED Tutorial

Complete guide to PLUMED enhanced sampling

MCPRO Tutorial

Complete guide to MCPRO Monte Carlo simulation

BLAST Tutorial

Complete guide to BLAST sequence analysis